SubtiBank SubtiBank
yqeU [2018-12-19 17:23:10]
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yqeU [2018-12-19 17:23:10]

unknown
locus
BSU25440
pI
5.29
mw
28.65 kDa
protein length
256 aa Sequence Blast
gene length
768 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.3|Protein synthesis, modification and degradation] → [category|SW 3.3.1|Translation] → [category|SW 3.3.1.2|rRNA modification and maturation]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.4|Heat shock proteins]

    • Gene

    Coordinates
    2,623,032 → 2,623,802

    The protein

    Protein family

  • RNA methyltransferase rsmE family (according to Swiss-Prot)

    • Structure

  • [PDB|1VHK] [pubmed|16021622]

    • Expression and Regulation

    Operons

    genes
    [gene|2E57DFB4162EF0CE759C1FC42C637E1B9E4B2F7E|hrcA]-[gene|ECAB685E9038DC03FA2CC659112BB07D30DE5C8C|grpE]-[gene|30E0AAABB803E577D0D9FBAEF9031319CABD3D89|dnaK]-[gene|D4C75B39B2DAECB9D85DAD66AAD4F923C9AEBEA7|dnaJ]-[gene|70D717806F5174447E01FF33DC8299CB025888CD|yqeT]-[gene|F8DC71B29D9C9BF4CF5124D0F01A71548306B9F9|yqeU]-[gene|6ADA5AF308D96218414EA92DFF4A57BAEAD0554B|yqeV]
    description
    [Pubmed|9023197]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|1339421], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|2E57DFB4162EF0CE759C1FC42C637E1B9E4B2F7E|HrcA]: repression, [Pubmed|1339421], in [regulon|2E57DFB4162EF0CE759C1FC42C637E1B9E4B2F7E|HrcA regulon]

    • regulation

  • induced by heat shock ([protein|search|HrcA]) [Pubmed|1339421]
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    additional information

  • the mRNA is cleaved by [protein|BAB297D18F94FFA67B8D12A684AB4D1BCDFB4981|RNase III] [PubMed|26883633]

    • Biological materials

    Mutant

  • MGNA-C497 (yqeU::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2495 NBRP B. subtilis, Japan]
  • BKE25440 (Δ[gene|F8DC71B29D9C9BF4CF5124D0F01A71548306B9F9|yqeU]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE25440 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACGCTGTGACACCTACT, downstream forward: _UP4_GAGTTATTAAGAGGTGATCA
  • BKK25440 (Δ[gene|F8DC71B29D9C9BF4CF5124D0F01A71548306B9F9|yqeU]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK25440 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACGCTGTGACACCTACT, downstream forward: _UP4_GAGTTATTAAGAGGTGATCA

    • References

  • 10383760,9023197,7592421,16021622,26883633